WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y38F2AR.12a.1 Sequence Name  Y38F2AR.12a.1
Length (nt)  3860   Chromosome Location  IV: 2399484-2412420
Chromosome . Primary Identifier  IV Chromosome Location . Start  2399484
Chromosome Location . End  2412420 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y38F2AR.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021430 Y38F2AR.12 Y38F2AR.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y38F2AR.12a Y38F2AR.12a 3774   IV: 2399560-2399619

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.12a.1 2399484 2412420 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon114962   136   IV: 2399484-2399619 Caenorhabditis elegans
Exon114965   121   IV: 2399828-2399948 Caenorhabditis elegans
Exon114968   320   IV: 2400271-2400590 Caenorhabditis elegans
Exon114971   480   IV: 2400906-2401385 Caenorhabditis elegans
Exon114974   168   IV: 2401717-2401884 Caenorhabditis elegans
Exon114977   333   IV: 2402468-2402800 Caenorhabditis elegans
Exon114980   102   IV: 2403051-2403152 Caenorhabditis elegans
Exon114985   572   IV: 2403911-2404482 Caenorhabditis elegans
Exon114988   268   IV: 2408137-2408404 Caenorhabditis elegans
Exon114992   190   IV: 2409377-2409566 Caenorhabditis elegans
Exon114996   324   IV: 2409614-2409937 Caenorhabditis elegans
Exon114998   246   IV: 2410686-2410931 Caenorhabditis elegans
Exon115000   385   IV: 2411691-2412075 Caenorhabditis elegans
Exon115001   215   IV: 2412206-2412420 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y38F2AR.12a.1 2399484 2412420 -1

1 Sequence

Length
3860

1 Sequence Ontology Term

Identifier Name Description
transcript