WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C45G7.5.1 Sequence Name  C45G7.5.1
Length (nt)  5402   Chromosome Location  IV: 2436498-2463369
Chromosome . Primary Identifier  IV Chromosome Location . Start  2436498
Chromosome Location . End  2463369 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C45G7.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C45G7.5 C45G7.5 5328   IV: 2436568-2436622

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C45G7.5.1 2436498 2463369 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115064   125   IV: 2436498-2436622 Caenorhabditis elegans
Exon115065   390   IV: 2437446-2437835 Caenorhabditis elegans
Exon115066   188   IV: 2438399-2438586 Caenorhabditis elegans
Exon115067   163   IV: 2438912-2439074 Caenorhabditis elegans
Exon115069   488   IV: 2439899-2440386 Caenorhabditis elegans
Exon115070   105   IV: 2441141-2441245 Caenorhabditis elegans
Exon115082   198   IV: 2454362-2454559 Caenorhabditis elegans
Exon115083   549   IV: 2455106-2455654 Caenorhabditis elegans
Exon115084   129   IV: 2456212-2456340 Caenorhabditis elegans
Exon115085   525   IV: 2456820-2457344 Caenorhabditis elegans
Exon115086   289   IV: 2457721-2458009 Caenorhabditis elegans
Exon115087   302   IV: 2458477-2458778 Caenorhabditis elegans
Exon115088   316   IV: 2459503-2459818 Caenorhabditis elegans
Exon115091   565   IV: 2460335-2460899 Caenorhabditis elegans
Exon115092   736   IV: 2461380-2462115 Caenorhabditis elegans
Exon115093   120   IV: 2462457-2462576 Caenorhabditis elegans
Exon115094   129   IV: 2462726-2462854 Caenorhabditis elegans
Exon115095   85   IV: 2463285-2463369 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C45G7.5.1 2436498 2463369 -1

1 Sequence

Length
5402

1 Sequence Ontology Term

Identifier Name Description
transcript