WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.2b.1 Sequence Name  Y54G2A.2b.1
Length (nt)  1999   Chromosome Location  IV: 2788689-2796813
Chromosome . Primary Identifier  IV Chromosome Location . Start  2788689
Chromosome Location . End  2796813 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021868 atln-1 Y54G2A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.2b Y54G2A.2b 1608   IV: 2788701-2788898

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.2b.1 2788689 2796813 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115711   210   IV: 2788689-2788898 Caenorhabditis elegans
Exon115714   109   IV: 2789757-2789865 Caenorhabditis elegans
Exon115716   143   IV: 2790492-2790634 Caenorhabditis elegans
Exon115718   105   IV: 2791624-2791728 Caenorhabditis elegans
Exon115720   201   IV: 2792269-2792469 Caenorhabditis elegans
Exon115722   139   IV: 2793348-2793486 Caenorhabditis elegans
Exon115725   150   IV: 2793757-2793906 Caenorhabditis elegans
Exon115728   266   IV: 2794478-2794743 Caenorhabditis elegans
Exon115731   240   IV: 2795654-2795893 Caenorhabditis elegans
Exon115734   436   IV: 2796378-2796813 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.2b.1 2788689 2796813 1

1 Sequence

Length
1999

1 Sequence Ontology Term

Identifier Name Description
transcript