WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54G2A.2b Sequence Name  Y54G2A.2b
Length (nt)  1608   Chromosome Location  IV: 2788701-2788898
Chromosome . Primary Identifier  IV Chromosome Location . Start  2788701
Chromosome Location . End  2788898
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.2b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE37292 ATLN-1, isoform b 61.1 535 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00085582
WBRNAi00057450
WBRNAi00112386
WBRNAi00112387
WBRNAi00112388

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
CDS:Y54G2A.2b 2788701 2788898 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021868 atln-1 Y54G2A.2 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier 		Start End Strand
CDS:Y54G2A.2b 2788701 2788898 1
CDS:Y54G2A.2b 2789757 2789865 1
CDS:Y54G2A.2b 2790492 2790634 1
CDS:Y54G2A.2b 2791624 2791728 1
CDS:Y54G2A.2b 2792269 2792469 1
CDS:Y54G2A.2b 2793348 2793486 1
CDS:Y54G2A.2b 2793757 2793906 1
CDS:Y54G2A.2b 2794478 2794743 1
CDS:Y54G2A.2b 2795654 2795893 1
CDS:Y54G2A.2b 2796378 2796434 1

1 Sequence

Length
1608

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54G2A.2b.1 Y54G2A.2b.1 1999   IV: 2788689-2796813