WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54G2A.39b.1 Sequence Name  Y54G2A.39b.1
Length (nt)  1086   Chromosome Location  IV: 2825372-2828069
Chromosome . Primary Identifier  IV Chromosome Location . Start  2825372
Chromosome Location . End  2828069 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54G2A.39b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00043062 clec-80 Y54G2A.39 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54G2A.39b Y54G2A.39b 1029   IV: 2825376-2825476

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.39b.1 2825372 2828069 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon115765   105   IV: 2825372-2825476 Caenorhabditis elegans
Exon115767   122   IV: 2825526-2825647 Caenorhabditis elegans
Exon115769   255   IV: 2826317-2826571 Caenorhabditis elegans
Exon115771   80   IV: 2826630-2826709 Caenorhabditis elegans
Exon115773   194   IV: 2827441-2827634 Caenorhabditis elegans
Exon115775   78   IV: 2827683-2827760 Caenorhabditis elegans
Exon115778   252   IV: 2827818-2828069 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54G2A.39b.1 2825372 2828069 1

1 Sequence

Length
1086

1 Sequence Ontology Term

Identifier Name Description
transcript