WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y67D8C.5c.1 Sequence Name  Y67D8C.5c.1
Length (nt)  13047   Chromosome Location  IV: 3032758-3050040
Chromosome . Primary Identifier  IV Chromosome Location . Start  3032758
Chromosome Location . End  3050040 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y67D8C.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022069 eel-1 Y67D8C.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y67D8C.5c Y67D8C.5c 12543   IV: 3033193-3033295

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.5c.1 3032758 3050040 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116185   538   IV: 3032758-3033295 Caenorhabditis elegans
Exon116192   107   IV: 3033922-3034028 Caenorhabditis elegans
Exon116200   892   IV: 3034088-3034979 Caenorhabditis elegans
Exon116208   1652   IV: 3035031-3036682 Caenorhabditis elegans
Exon116216   260   IV: 3037227-3037486 Caenorhabditis elegans
Exon116224   1336   IV: 3037894-3039229 Caenorhabditis elegans
Exon116234   406   IV: 3039695-3040100 Caenorhabditis elegans
Exon116240   2322   IV: 3040498-3042819 Caenorhabditis elegans
Exon116248   1037   IV: 3042876-3043912 Caenorhabditis elegans
Exon116256   1563   IV: 3044133-3045695 Caenorhabditis elegans
Exon116264   873   IV: 3045755-3046627 Caenorhabditis elegans
Exon116272   585   IV: 3046686-3047270 Caenorhabditis elegans
Exon116279   768   IV: 3048190-3048957 Caenorhabditis elegans
Exon116288   411   IV: 3049283-3049693 Caenorhabditis elegans
Exon116300   297   IV: 3049744-3050040 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y67D8C.5c.1 3032758 3050040 -1

1 Sequence

Length
13047

1 Sequence Ontology Term

Identifier Name Description
transcript