WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42A6.9.1 Sequence Name  F42A6.9.1
Length (nt)  2862   Chromosome Location  IV: 3342515-3350027
Chromosome . Primary Identifier  IV Chromosome Location . Start  3342515
Chromosome Location . End  3350027 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42A6.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018330 elks-1 F42A6.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42A6.9 F42A6.9 2511   IV: 3342757-3342928

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F42A6.9.1 3342515 3350027 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon116813   414   IV: 3342515-3342928 Caenorhabditis elegans
Exon116815   144   IV: 3344332-3344475 Caenorhabditis elegans
Exon116816   116   IV: 3344533-3344648 Caenorhabditis elegans
Exon116817   370   IV: 3345433-3345802 Caenorhabditis elegans
Exon116818   1033   IV: 3346075-3347107 Caenorhabditis elegans
Exon116819   109   IV: 3347488-3347596 Caenorhabditis elegans
Exon116820   190   IV: 3347645-3347834 Caenorhabditis elegans
Exon116821   246   IV: 3348923-3349168 Caenorhabditis elegans
Exon116822   121   IV: 3349304-3349424 Caenorhabditis elegans
Exon116823   119   IV: 3349909-3350027 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F42A6.9.1 3342515 3350027 -1

1 Sequence

Length
2862

1 Sequence Ontology Term

Identifier Name Description
transcript