WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023288 Gene Name  F49F1.13
Sequence Name  ? F49F1.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by eat-2; meg-4; and meg-3 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1030
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00023288

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

39 Allele

Public Name
gk963722
gk963908
WBVar02124199
WBVar02121770
WBVar02124587
WBVar02123244
WBVar02124013
WBVar02121201
WBVar02120501
WBVar02124792
WBVar02121023
WBVar02123081
WBVar02122954
WBVar02121616
WBVar02123921
WBVar02124114
WBVar02122391
WBVar02124696
WBVar02122139
WBVar02122592
gkDf44
WBVar00091216
WBVar00091098
gk964335
gk964334
gk199520
gk199523
gk199522
gk199521
gk686233

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00023288 4143317 4144346 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_4143087..4143316   230 IV: 4143087-4143316 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:eat-2(ad1116)_downregulated
  Targets of endo-siRNA that showed significantly increased expression in BFF40[meg-3(tm4259);meg-4(ax2026);mex-5::gfp::h2b::tbb-2] comparing to in SX1263[Pmex-5::gfp::h2b::tbb-2 (mjIs134 II)] dissected gonad isolated from 1-day old adult hermaphrodites. DESeq2, fold change > 2, FDR < 0.01 WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00023288 4143317 4144346 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1030

1 Sequence Ontology Term