WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R08C7.10b.1 Sequence Name  R08C7.10b.1
Length (nt)  2511   Chromosome Location  IV: 4442362-4445740
Chromosome . Primary Identifier  IV Chromosome Location . Start  4442362
Chromosome Location . End  4445740 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R08C7.10b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019953 wapl-1 R08C7.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R08C7.10b R08C7.10b 2247   IV: 4442626-4442700

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R08C7.10b.1 4442362 4445740 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon119181   339   IV: 4442362-4442700 Caenorhabditis elegans
Exon119187   333   IV: 4442752-4443084 Caenorhabditis elegans
Exon119191   126   IV: 4443417-4443542 Caenorhabditis elegans
Exon119193   75   IV: 4443592-4443666 Caenorhabditis elegans
Exon119197   232   IV: 4443721-4443952 Caenorhabditis elegans
Exon119201   77   IV: 4444001-4444077 Caenorhabditis elegans
Exon119205   89   IV: 4444127-4444215 Caenorhabditis elegans
Exon119209   470   IV: 4444267-4444736 Caenorhabditis elegans
Exon119213   194   IV: 4444782-4444975 Caenorhabditis elegans
Exon119217   155   IV: 4445022-4445176 Caenorhabditis elegans
Exon119222   199   IV: 4445226-4445424 Caenorhabditis elegans
Exon119225   181   IV: 4445464-4445644 Caenorhabditis elegans
Exon119229   41   IV: 4445700-4445740 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R08C7.10b.1 4442362 4445740 -1

1 Sequence

Length
2511

1 Sequence Ontology Term

Identifier Name Description
transcript