WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R11E3.5a.1 Sequence Name  R11E3.5a.1
Length (nt)  1531   Chromosome Location  IV: 4784469-4788692
Chromosome . Primary Identifier  IV Chromosome Location . Start  4784469
Chromosome Location . End  4788692 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11E3.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003694 nhr-104 R11E3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11E3.5a R11E3.5a 1188   IV: 4784556-4784653

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R11E3.5a.1 4784469 4788692 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon120107   185   IV: 4784469-4784653 Caenorhabditis elegans
Exon120112   97   IV: 4785152-4785248 Caenorhabditis elegans
Exon120114   152   IV: 4785299-4785450 Caenorhabditis elegans
Exon120118   116   IV: 4786310-4786425 Caenorhabditis elegans
Exon120122   185   IV: 4786766-4786950 Caenorhabditis elegans
Exon120125   126   IV: 4787290-4787415 Caenorhabditis elegans
Exon120129   191   IV: 4787470-4787660 Caenorhabditis elegans
Exon120134   66   IV: 4787714-4787779 Caenorhabditis elegans
Exon120137   86   IV: 4787917-4788002 Caenorhabditis elegans
Exon120141   327   IV: 4788366-4788692 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R11E3.5a.1 4784469 4788692 -1

1 Sequence

Length
1531

1 Sequence Ontology Term

Identifier Name Description
transcript