WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R11E3.5a Sequence Name  R11E3.5a
Length (nt)  1188   Chromosome Location  IV: 4784556-4784653
Chromosome . Primary Identifier  IV Chromosome Location . Start  4784556
Chromosome Location . End  4784653
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11E3.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31719 NHR-104, isoform a 45.8 395 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00051791
WBRNAi00022424
WBRNAi00115809

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R11E3.5a 4784556 4784653 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003694 nhr-104 R11E3.5 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:R11E3.5a 4784556 4784653 -1
CDS:R11E3.5a 4785152 4785248 -1
CDS:R11E3.5a 4785299 4785450 -1
CDS:R11E3.5a 4786310 4786425 -1
CDS:R11E3.5a 4786766 4786950 -1
CDS:R11E3.5a 4787290 4787415 -1
CDS:R11E3.5a 4787470 4787660 -1
CDS:R11E3.5a 4787714 4787779 -1
CDS:R11E3.5a 4787917 4788002 -1
CDS:R11E3.5a 4788366 4788436 -1

1 Sequence

Length
1188

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R11E3.5a.1 R11E3.5a.1 1531   IV: 4784469-4788692