WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H06H21.10a.1 Sequence Name  H06H21.10a.1
Length (nt)  4168   Chromosome Location  IV: 4827853-4841127
Chromosome . Primary Identifier  IV Chromosome Location . Start  4827853
Chromosome Location . End  4841127 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H06H21.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019166 tat-2 H06H21.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H06H21.10a H06H21.10a 3945   IV: 4828076-4828111

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H06H21.10a.1 4827853 4841127 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon120322   259   IV: 4827853-4828111 Caenorhabditis elegans
Exon120324   118   IV: 4828527-4828644 Caenorhabditis elegans
Exon120328   98   IV: 4828751-4828848 Caenorhabditis elegans
Exon120334   217   IV: 4829370-4829586 Caenorhabditis elegans
Exon120341   329   IV: 4829806-4830134 Caenorhabditis elegans
Exon120349   133   IV: 4830942-4831074 Caenorhabditis elegans
Exon120356   394   IV: 4831469-4831862 Caenorhabditis elegans
Exon120363   151   IV: 4832638-4832788 Caenorhabditis elegans
Exon120369   149   IV: 4832916-4833064 Caenorhabditis elegans
Exon120375   88   IV: 4833110-4833197 Caenorhabditis elegans
Exon120384   144   IV: 4834287-4834430 Caenorhabditis elegans
Exon120393   198   IV: 4834637-4834834 Caenorhabditis elegans
Exon120399   126   IV: 4834891-4835016 Caenorhabditis elegans
Exon120408   423   IV: 4835823-4836245 Caenorhabditis elegans
Exon120415   69   IV: 4837247-4837315 Caenorhabditis elegans
Exon120422   281   IV: 4837452-4837732 Caenorhabditis elegans
Exon120430   378   IV: 4838886-4839263 Caenorhabditis elegans
Exon120437   154   IV: 4839455-4839608 Caenorhabditis elegans
Exon120446   135   IV: 4840116-4840250 Caenorhabditis elegans
Exon120454   99   IV: 4840395-4840493 Caenorhabditis elegans
Exon120460   114   IV: 4840543-4840656 Caenorhabditis elegans
Exon120470   111   IV: 4841017-4841127 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H06H21.10a.1 4827853 4841127 -1

1 Sequence

Length
4168

1 Sequence Ontology Term

Identifier Name Description
transcript