WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H06H21.10f.1 Sequence Name  H06H21.10f.1
Length (nt)  4273   Chromosome Location  IV: 4827853-4846893
Chromosome . Primary Identifier  IV Chromosome Location . Start  4827853
Chromosome Location . End  4846893 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H06H21.10f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019166 tat-2 H06H21.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H06H21.10f H06H21.10f 4050   IV: 4828076-4828111

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H06H21.10f.1 4827853 4846893 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon120320   259   IV: 4827853-4828111 Caenorhabditis elegans
Exon120325   118   IV: 4828527-4828644 Caenorhabditis elegans
Exon120331   98   IV: 4828751-4828848 Caenorhabditis elegans
Exon120339   217   IV: 4829370-4829586 Caenorhabditis elegans
Exon120346   329   IV: 4829806-4830134 Caenorhabditis elegans
Exon120354   133   IV: 4830942-4831074 Caenorhabditis elegans
Exon120361   394   IV: 4831469-4831862 Caenorhabditis elegans
Exon120368   151   IV: 4832638-4832788 Caenorhabditis elegans
Exon120374   149   IV: 4832916-4833064 Caenorhabditis elegans
Exon120380   88   IV: 4833110-4833197 Caenorhabditis elegans
Exon120389   144   IV: 4834287-4834430 Caenorhabditis elegans
Exon120398   198   IV: 4834637-4834834 Caenorhabditis elegans
Exon120404   126   IV: 4834891-4835016 Caenorhabditis elegans
Exon120413   423   IV: 4835823-4836245 Caenorhabditis elegans
Exon120420   69   IV: 4837247-4837315 Caenorhabditis elegans
Exon120427   281   IV: 4837452-4837732 Caenorhabditis elegans
Exon120435   378   IV: 4838886-4839263 Caenorhabditis elegans
Exon120442   154   IV: 4839455-4839608 Caenorhabditis elegans
Exon120451   135   IV: 4840116-4840250 Caenorhabditis elegans
Exon120459   99   IV: 4840395-4840493 Caenorhabditis elegans
Exon120465   114   IV: 4840543-4840656 Caenorhabditis elegans
Exon120475   155   IV: 4841017-4841171 Caenorhabditis elegans
Exon120480   57   IV: 4841707-4841763 Caenorhabditis elegans
Exon120496   4   IV: 4846890-4846893 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H06H21.10f.1 4827853 4846893 -1

1 Sequence

Length
4273

1 Sequence Ontology Term

Identifier Name Description
transcript