WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:C01G5.8b.1 Sequence Name  C01G5.8b.1
Length (nt)  2679   Chromosome Location  IV: 6548853-6552504
Chromosome . Primary Identifier  IV Chromosome Location . Start  6548853
Chromosome Location . End  6552504 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C01G5.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015310 fan-1 C01G5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C01G5.8b C01G5.8b 1326   IV: 6550617-6550711

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C01G5.8b.1 6548853 6552504 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127276   169   IV: 6548853-6549021 Caenorhabditis elegans
Exon127278   93   IV: 6549069-6549161 Caenorhabditis elegans
Exon127280   137   IV: 6549210-6549346 Caenorhabditis elegans
Exon127282   262   IV: 6549394-6549655 Caenorhabditis elegans
Exon127283   203   IV: 6549708-6549910 Caenorhabditis elegans
Exon127285   70   IV: 6549960-6550029 Caenorhabditis elegans
Exon127287   95   IV: 6550075-6550169 Caenorhabditis elegans
Exon127289   159   IV: 6550227-6550385 Caenorhabditis elegans
Exon127291   89   IV: 6550470-6550558 Caenorhabditis elegans
Exon127294   102   IV: 6550610-6550711 Caenorhabditis elegans
Exon127296   278   IV: 6550759-6551036 Caenorhabditis elegans
Exon127299   80   IV: 6551080-6551159 Caenorhabditis elegans
Exon127302   307   IV: 6551205-6551511 Caenorhabditis elegans
Exon127305   305   IV: 6551821-6552125 Caenorhabditis elegans
Exon127307   330   IV: 6552175-6552504 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C01G5.8b.1 6548853 6552504 1

1 Sequence

Length
2679

1 Sequence Ontology Term

Identifier Name Description
transcript