WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F38A5.1b.1 Sequence Name  F38A5.1b.1
Length (nt)  1928   Chromosome Location  IV: 6579840-6582618
Chromosome . Primary Identifier  IV Chromosome Location . Start  6579840
Chromosome Location . End  6582618 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A5.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018160 odr-8 F38A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F38A5.1b F38A5.1b 1728   IV: 6580040-6580190

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.1b.1 6579840 6582618 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon127427   351   IV: 6579840-6580190 Caenorhabditis elegans
Exon127429   169   IV: 6580241-6580409 Caenorhabditis elegans
Exon127431   97   IV: 6580455-6580551 Caenorhabditis elegans
Exon127433   182   IV: 6580597-6580778 Caenorhabditis elegans
Exon127435   150   IV: 6581054-6581203 Caenorhabditis elegans
Exon127437   100   IV: 6581251-6581350 Caenorhabditis elegans
Exon127439   158   IV: 6581398-6581555 Caenorhabditis elegans
Exon127441   97   IV: 6581602-6581698 Caenorhabditis elegans
Exon127443   195   IV: 6581744-6581938 Caenorhabditis elegans
Exon127445   182   IV: 6581990-6582171 Caenorhabditis elegans
Exon127447   175   IV: 6582216-6582390 Caenorhabditis elegans
Exon127448   72   IV: 6582547-6582618 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F38A5.1b.1 6579840 6582618 -1

1 Sequence

Length
1928

1 Sequence Ontology Term

Identifier Name Description
transcript