WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A12.4.1 Sequence Name  T05A12.4.1
Length (nt)  5375   Chromosome Location  IV: 6887948-6897783
Chromosome . Primary Identifier  IV Chromosome Location . Start  6887948
Chromosome Location . End  6897783 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A12.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020235 T05A12.4 T05A12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A12.4 T05A12.4 4869   IV: 6888981-6889007

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A12.4.1 6887948 6897783 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128367   241   IV: 6887948-6888188 Caenorhabditis elegans
Exon128369   37   IV: 6888971-6889007 Caenorhabditis elegans
Exon128370   150   IV: 6889055-6889204 Caenorhabditis elegans
Exon128372   149   IV: 6889252-6889400 Caenorhabditis elegans
Exon128374   187   IV: 6889446-6889632 Caenorhabditis elegans
Exon128376   146   IV: 6889681-6889826 Caenorhabditis elegans
Exon128378   120   IV: 6889870-6889989 Caenorhabditis elegans
Exon128380   310   IV: 6890167-6890476 Caenorhabditis elegans
Exon128382   282   IV: 6890532-6890813 Caenorhabditis elegans
Exon128384   124   IV: 6890871-6890994 Caenorhabditis elegans
Exon128386   507   IV: 6891530-6892036 Caenorhabditis elegans
Exon128389   234   IV: 6892506-6892739 Caenorhabditis elegans
Exon128391   683   IV: 6892785-6893467 Caenorhabditis elegans
Exon128393   75   IV: 6893780-6893854 Caenorhabditis elegans
Exon128395   369   IV: 6893905-6894273 Caenorhabditis elegans
Exon128397   170   IV: 6894788-6894957 Caenorhabditis elegans
Exon128399   171   IV: 6895007-6895177 Caenorhabditis elegans
Exon128401   312   IV: 6895698-6896009 Caenorhabditis elegans
Exon128404   120   IV: 6896054-6896173 Caenorhabditis elegans
Exon128406   133   IV: 6896660-6896792 Caenorhabditis elegans
Exon128408   210   IV: 6896838-6897047 Caenorhabditis elegans
Exon128410   232   IV: 6897095-6897326 Caenorhabditis elegans
Exon128412   413   IV: 6897371-6897783 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A12.4.1 6887948 6897783 1

1 Sequence

Length
5375

1 Sequence Ontology Term

Identifier Name Description
transcript