WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T05A12.4.2 Sequence Name  T05A12.4.2
Length (nt)  5138   Chromosome Location  IV: 6888967-6897783
Chromosome . Primary Identifier  IV Chromosome Location . Start  6888967
Chromosome Location . End  6897783 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T05A12.4.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020235 T05A12.4 T05A12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05A12.4 T05A12.4 4869   IV: 6888981-6889007

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T05A12.4.2 6888967 6897783 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon128368   41   IV: 6888967-6889007 Caenorhabditis elegans
Exon128371   150   IV: 6889055-6889204 Caenorhabditis elegans
Exon128373   149   IV: 6889252-6889400 Caenorhabditis elegans
Exon128375   187   IV: 6889446-6889632 Caenorhabditis elegans
Exon128377   146   IV: 6889681-6889826 Caenorhabditis elegans
Exon128379   120   IV: 6889870-6889989 Caenorhabditis elegans
Exon128381   310   IV: 6890167-6890476 Caenorhabditis elegans
Exon128383   282   IV: 6890532-6890813 Caenorhabditis elegans
Exon128385   124   IV: 6890871-6890994 Caenorhabditis elegans
Exon128387   507   IV: 6891530-6892036 Caenorhabditis elegans
Exon128390   234   IV: 6892506-6892739 Caenorhabditis elegans
Exon128392   683   IV: 6892785-6893467 Caenorhabditis elegans
Exon128394   75   IV: 6893780-6893854 Caenorhabditis elegans
Exon128396   369   IV: 6893905-6894273 Caenorhabditis elegans
Exon128398   170   IV: 6894788-6894957 Caenorhabditis elegans
Exon128400   171   IV: 6895007-6895177 Caenorhabditis elegans
Exon128402   312   IV: 6895698-6896009 Caenorhabditis elegans
Exon128405   120   IV: 6896054-6896173 Caenorhabditis elegans
Exon128407   133   IV: 6896660-6896792 Caenorhabditis elegans
Exon128409   210   IV: 6896838-6897047 Caenorhabditis elegans
Exon128411   232   IV: 6897095-6897326 Caenorhabditis elegans
Exon128413   413   IV: 6897371-6897783 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T05A12.4.2 6888967 6897783 1

1 Sequence

Length
5138

1 Sequence Ontology Term

Identifier Name Description
transcript