WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42D4.8.1 Sequence Name  C42D4.8.1
Length (nt)  4387   Chromosome Location  IV: 7160135-7165748
Chromosome . Primary Identifier  IV Chromosome Location . Start  7160135
Chromosome Location . End  7165748 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42D4.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004411 rpc-1 C42D4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42D4.8 C42D4.8 4203   IV: 7160285-7160428

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42D4.8.1 7160135 7165748 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129413   294   IV: 7160135-7160428 Caenorhabditis elegans
Exon129414   689   IV: 7160546-7161234 Caenorhabditis elegans
Exon129415   207   IV: 7161620-7161826 Caenorhabditis elegans
Exon129416   134   IV: 7161876-7162009 Caenorhabditis elegans
Exon129417   883   IV: 7162069-7162951 Caenorhabditis elegans
Exon129418   609   IV: 7162998-7163606 Caenorhabditis elegans
Exon129419   607   IV: 7163654-7164260 Caenorhabditis elegans
Exon129420   246   IV: 7164543-7164788 Caenorhabditis elegans
Exon129421   191   IV: 7164834-7165024 Caenorhabditis elegans
Exon129422   160   IV: 7165068-7165227 Caenorhabditis elegans
Exon129423   150   IV: 7165274-7165423 Caenorhabditis elegans
Exon129424   139   IV: 7165470-7165608 Caenorhabditis elegans
Exon129425   78   IV: 7165671-7165748 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42D4.8.1 7160135 7165748 -1

1 Sequence

Length
4387

1 Sequence Ontology Term

Identifier Name Description
transcript