WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13A1.4a.1 Sequence Name  R13A1.4a.1
Length (nt)  2496   Chromosome Location  IV: 7198493-7203660
Chromosome . Primary Identifier  IV Chromosome Location . Start  7198493
Chromosome Location . End  7203660 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13A1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006748 unc-8 R13A1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13A1.4a R13A1.4a 2334   IV: 7198493-7198530

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R13A1.4a.1 7198493 7203660 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon129545   38   IV: 7198493-7198530 Caenorhabditis elegans
Exon129547   58   IV: 7198904-7198961 Caenorhabditis elegans
Exon129548   114   IV: 7199532-7199645 Caenorhabditis elegans
Exon129552   149   IV: 7200161-7200309 Caenorhabditis elegans
Exon129556   143   IV: 7200360-7200502 Caenorhabditis elegans
Exon129560   83   IV: 7200547-7200629 Caenorhabditis elegans
Exon129564   92   IV: 7200686-7200777 Caenorhabditis elegans
Exon129568   139   IV: 7200824-7200962 Caenorhabditis elegans
Exon129572   87   IV: 7201047-7201133 Caenorhabditis elegans
Exon129576   138   IV: 7201176-7201313 Caenorhabditis elegans
Exon129580   102   IV: 7201358-7201459 Caenorhabditis elegans
Exon129584   158   IV: 7201507-7201664 Caenorhabditis elegans
Exon129588   101   IV: 7201709-7201809 Caenorhabditis elegans
Exon129592   161   IV: 7201873-7202033 Caenorhabditis elegans
Exon129596   93   IV: 7202079-7202171 Caenorhabditis elegans
Exon129600   118   IV: 7202216-7202333 Caenorhabditis elegans
Exon129604   144   IV: 7202706-7202849 Caenorhabditis elegans
Exon129608   140   IV: 7202896-7203035 Caenorhabditis elegans
Exon129612   96   IV: 7203172-7203267 Caenorhabditis elegans
Exon129619   342   IV: 7203319-7203660 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R13A1.4a.1 7198493 7203660 1

1 Sequence

Length
2496

1 Sequence Ontology Term

Identifier Name Description
transcript