WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55G1.13.1 Sequence Name  F55G1.13.1
Length (nt)  2761   Chromosome Location  IV: 7493743-7497850
Chromosome . Primary Identifier  IV Chromosome Location . Start  7493743
Chromosome Location . End  7497850 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55G1.13.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018906 egas-4 F55G1.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55G1.13 F55G1.13 2652   IV: 7493843-7493974

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F55G1.13.1 7493743 7497850 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon130892   232   IV: 7493743-7493974 Caenorhabditis elegans
Exon130893   129   IV: 7494020-7494148 Caenorhabditis elegans
Exon130894   128   IV: 7494613-7494740 Caenorhabditis elegans
Exon130895   106   IV: 7494788-7494893 Caenorhabditis elegans
Exon130896   96   IV: 7494947-7495042 Caenorhabditis elegans
Exon130897   268   IV: 7495088-7495355 Caenorhabditis elegans
Exon130898   155   IV: 7495399-7495553 Caenorhabditis elegans
Exon130899   65   IV: 7495599-7495663 Caenorhabditis elegans
Exon130900   129   IV: 7495709-7495837 Caenorhabditis elegans
Exon130901   123   IV: 7495885-7496007 Caenorhabditis elegans
Exon130902   126   IV: 7496063-7496188 Caenorhabditis elegans
Exon130903   114   IV: 7496246-7496359 Caenorhabditis elegans
Exon130904   321   IV: 7496402-7496722 Caenorhabditis elegans
Exon130905   78   IV: 7496769-7496846 Caenorhabditis elegans
Exon130906   282   IV: 7496891-7497172 Caenorhabditis elegans
Exon130907   114   IV: 7497221-7497334 Caenorhabditis elegans
Exon130908   244   IV: 7497391-7497634 Caenorhabditis elegans
Exon130909   51   IV: 7497800-7497850 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F55G1.13.1 7493743 7497850 -1

1 Sequence

Length
2761

1 Sequence Ontology Term

Identifier Name Description
transcript