WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F45E4.3a.1 Sequence Name  F45E4.3a.1
Length (nt)  27002   Chromosome Location  IV: 7588931-7628238
Chromosome . Primary Identifier  IV Chromosome Location . Start  7588931
Chromosome Location . End  7628238 Method  Coding_transcript
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This MRNA isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F45E4.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018468 cla-1 F45E4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F45E4.3a F45E4.3a 26769   IV: 7588931-7588956

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F45E4.3a.1 7588931 7628238 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

40 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon131245   26   IV: 7588931-7588956 Caenorhabditis elegans
Exon131246   79   IV: 7589013-7589091 Caenorhabditis elegans
Exon131248   226   IV: 7589206-7589431 Caenorhabditis elegans
Exon131250   129   IV: 7589843-7589971 Caenorhabditis elegans
Exon131252   170   IV: 7590021-7590190 Caenorhabditis elegans
Exon131254   245   IV: 7590239-7590483 Caenorhabditis elegans
Exon131256   98   IV: 7590530-7590627 Caenorhabditis elegans
Exon131258   5888   IV: 7590673-7596560 Caenorhabditis elegans
Exon131260   621   IV: 7596625-7597245 Caenorhabditis elegans
Exon131262   1675   IV: 7597249-7598923 Caenorhabditis elegans
Exon131264   6695   IV: 7598928-7605622 Caenorhabditis elegans
Exon131267   113   IV: 7605698-7605810 Caenorhabditis elegans
Exon131269   207   IV: 7606453-7606659 Caenorhabditis elegans
Exon131271   153   IV: 7606708-7606860 Caenorhabditis elegans
Exon131273   2485   IV: 7607950-7610434 Caenorhabditis elegans
Exon131275   113   IV: 7610650-7610762 Caenorhabditis elegans
Exon131279   62   IV: 7610836-7610897 Caenorhabditis elegans
Exon131283   69   IV: 7611276-7611344 Caenorhabditis elegans
Exon131287   314   IV: 7611439-7611752 Caenorhabditis elegans
Exon131291   45   IV: 7612643-7612687 Caenorhabditis elegans
Exon131295   50   IV: 7612960-7613009 Caenorhabditis elegans
Exon131299   48   IV: 7613055-7613102 Caenorhabditis elegans
Exon131303   417   IV: 7613223-7613639 Caenorhabditis elegans
Exon131307   513   IV: 7614014-7614526 Caenorhabditis elegans
Exon131311   285   IV: 7614574-7614858 Caenorhabditis elegans
Exon131315   349   IV: 7615133-7615481 Caenorhabditis elegans
Exon131319   190   IV: 7615730-7615919 Caenorhabditis elegans
Exon131323   85   IV: 7615964-7616048 Caenorhabditis elegans
Exon131327   209   IV: 7616487-7616695 Caenorhabditis elegans
Exon131331   581   IV: 7616752-7617332 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F45E4.3a.1 7588931 7628238 1

1 Sequence

Length
27002

1 Sequence Ontology Term

Identifier Name Description
transcript