WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C55F2.1b.1 Sequence Name  C55F2.1b.1
Length (nt)  1960   Chromosome Location  IV: 7882028-7900251
Chromosome . Primary Identifier  IV Chromosome Location . Start  7882028
Chromosome Location . End  7900251 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C55F2.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016957 atic-1 C55F2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C55F2.1b C55F2.1b 1785   IV: 7882067-7882088

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C55F2.1b.1 7882028 7900251 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon132223   61   IV: 7882028-7882088 Caenorhabditis elegans
Exon132225   248   IV: 7882359-7882606 Caenorhabditis elegans
Exon132227   112   IV: 7883837-7883948 Caenorhabditis elegans
Exon132229   92   IV: 7885446-7885537 Caenorhabditis elegans
Exon132232   51   IV: 7886826-7886876 Caenorhabditis elegans
Exon132237   97   IV: 7891599-7891695 Caenorhabditis elegans
Exon132241   66   IV: 7892665-7892730 Caenorhabditis elegans
Exon132245   126   IV: 7892988-7893113 Caenorhabditis elegans
Exon132249   114   IV: 7893686-7893799 Caenorhabditis elegans
Exon132255   82   IV: 7894280-7894361 Caenorhabditis elegans
Exon132259   94   IV: 7894407-7894500 Caenorhabditis elegans
Exon132264   129   IV: 7894544-7894672 Caenorhabditis elegans
Exon132268   93   IV: 7894775-7894867 Caenorhabditis elegans
Exon132272   74   IV: 7895068-7895141 Caenorhabditis elegans
Exon132286   112   IV: 7898746-7898857 Caenorhabditis elegans
Exon132290   57   IV: 7898990-7899046 Caenorhabditis elegans
Exon132294   96   IV: 7899234-7899329 Caenorhabditis elegans
Exon132297   256   IV: 7899996-7900251 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C55F2.1b.1 7882028 7900251 1

1 Sequence

Length
1960

1 Sequence Ontology Term

Identifier Name Description
transcript