WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C07G1.3a.1 Sequence Name  C07G1.3a.1
Length (nt)  2244   Chromosome Location  IV: 8176482-8188879
Chromosome . Primary Identifier  IV Chromosome Location . Start  8176482
Chromosome Location . End  8188879 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C07G1.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003961 pct-1 C07G1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C07G1.3a C07G1.3a 1734   IV: 8177109-8177211

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C07G1.3a.1 8176482 8188879 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133032   57   IV: 8176482-8176538 Caenorhabditis elegans
Exon133034   112   IV: 8177100-8177211 Caenorhabditis elegans
Exon133036   199   IV: 8177762-8177960 Caenorhabditis elegans
Exon133039   104   IV: 8178578-8178681 Caenorhabditis elegans
Exon133045   97   IV: 8185625-8185721 Caenorhabditis elegans
Exon133049   52   IV: 8185768-8185819 Caenorhabditis elegans
Exon133053   246   IV: 8186524-8186769 Caenorhabditis elegans
Exon133057   132   IV: 8187067-8187198 Caenorhabditis elegans
Exon133061   413   IV: 8187290-8187702 Caenorhabditis elegans
Exon133065   229   IV: 8187997-8188225 Caenorhabditis elegans
Exon133070   603   IV: 8188277-8188879 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C07G1.3a.1 8176482 8188879 1

1 Sequence

Length
2244

1 Sequence Ontology Term

Identifier Name Description
transcript