WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T26A8.1.1 Sequence Name  T26A8.1.1
Length (nt)  2578   Chromosome Location  IV: 8433120-8438000
Chromosome . Primary Identifier  IV Chromosome Location . Start  8433120
Chromosome Location . End  8438000 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T26A8.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020824 pdtf-1 T26A8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T26A8.1 T26A8.1 2127   IV: 8433142-8433184

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T26A8.1.1 8433120 8438000 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133759   65   IV: 8433120-8433184 Caenorhabditis elegans
Exon133760   137   IV: 8433238-8433374 Caenorhabditis elegans
Exon133762   211   IV: 8433429-8433639 Caenorhabditis elegans
Exon133764   261   IV: 8433690-8433950 Caenorhabditis elegans
Exon133766   172   IV: 8434096-8434267 Caenorhabditis elegans
Exon133768   345   IV: 8434320-8434664 Caenorhabditis elegans
Exon133770   293   IV: 8435715-8436007 Caenorhabditis elegans
Exon133772   100   IV: 8436085-8436184 Caenorhabditis elegans
Exon133774   160   IV: 8436254-8436413 Caenorhabditis elegans
Exon133776   324   IV: 8436462-8436785 Caenorhabditis elegans
Exon133779   510   IV: 8437491-8438000 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T26A8.1.1 8433120 8438000 1

1 Sequence

Length
2578

1 Sequence Ontology Term

Identifier Name Description
transcript