WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28C12.10a.1 Sequence Name  C28C12.10a.1
Length (nt)  3274   Chromosome Location  IV: 8503492-8510548
Chromosome . Primary Identifier  IV Chromosome Location . Start  8503492
Chromosome Location . End  8510548 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28C12.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006450 tag-77 C28C12.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28C12.10a C28C12.10a 3084   IV: 8503674-8503971

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10a.1 8503492 8510548 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon133858   480   IV: 8503492-8503971 Caenorhabditis elegans
Exon133864   202   IV: 8504057-8504258 Caenorhabditis elegans
Exon133870   100   IV: 8504312-8504411 Caenorhabditis elegans
Exon133876   717   IV: 8504492-8505208 Caenorhabditis elegans
Exon133882   249   IV: 8505277-8505525 Caenorhabditis elegans
Exon133888   321   IV: 8505569-8505889 Caenorhabditis elegans
Exon133894   276   IV: 8505944-8506219 Caenorhabditis elegans
Exon133900   100   IV: 8506368-8506467 Caenorhabditis elegans
Exon133906   225   IV: 8506792-8507016 Caenorhabditis elegans
Exon133914   239   IV: 8507093-8507331 Caenorhabditis elegans
Exon133920   215   IV: 8509187-8509401 Caenorhabditis elegans
Exon133923   150   IV: 8510399-8510548 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28C12.10a.1 8503492 8510548 -1

1 Sequence

Length
3274

1 Sequence Ontology Term

Identifier Name Description
transcript