WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F42A9.1b.1 Sequence Name  F42A9.1b.1
Length (nt)  4666   Chromosome Location  IV: 8631333-8644016
Chromosome . Primary Identifier  IV Chromosome Location . Start  8631333
Chromosome Location . End  8644016 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F42A9.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006483 dgk-4 F42A9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42A9.1b F42A9.1b 3867   IV: 8631433-8631528

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F42A9.1b.1 8631333 8644016 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon134178   196   IV: 8631333-8631528 Caenorhabditis elegans
Exon134181   60   IV: 8631977-8632036 Caenorhabditis elegans
Exon134183   82   IV: 8632080-8632161 Caenorhabditis elegans
Exon134185   107   IV: 8632208-8632314 Caenorhabditis elegans
Exon134187   99   IV: 8632521-8632619 Caenorhabditis elegans
Exon134189   163   IV: 8632984-8633146 Caenorhabditis elegans
Exon134191   148   IV: 8633434-8633581 Caenorhabditis elegans
Exon134193   272   IV: 8633804-8634075 Caenorhabditis elegans
Exon134195   229   IV: 8634192-8634420 Caenorhabditis elegans
Exon134197   301   IV: 8634478-8634778 Caenorhabditis elegans
Exon134199   523   IV: 8634885-8635407 Caenorhabditis elegans
Exon134201   160   IV: 8635487-8635646 Caenorhabditis elegans
Exon134204   352   IV: 8636500-8636851 Caenorhabditis elegans
Exon134207   471   IV: 8637380-8637850 Caenorhabditis elegans
Exon134213   156   IV: 8641785-8641940 Caenorhabditis elegans
Exon134215   187   IV: 8642484-8642670 Caenorhabditis elegans
Exon134217   173   IV: 8642748-8642920 Caenorhabditis elegans
Exon134218   987   IV: 8643030-8644016 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F42A9.1b.1 8631333 8644016 1

1 Sequence

Length
4666

1 Sequence Ontology Term

Identifier Name Description
transcript