WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T11B7.4e.1 Sequence Name  T11B7.4e.1
Length (nt)  2268   Chromosome Location  IV: 8852494-8862223
Chromosome . Primary Identifier  IV Chromosome Location . Start  8852494
Chromosome Location . End  8862223 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T11B7.4e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001132 alp-1 T11B7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T11B7.4e T11B7.4e 2055   IV: 8852514-8852612

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T11B7.4e.1 8852494 8862223 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135056   119   IV: 8852494-8852612 Caenorhabditis elegans
Exon135063   146   IV: 8853119-8853264 Caenorhabditis elegans
Exon135069   109   IV: 8854660-8854768 Caenorhabditis elegans
Exon135074   158   IV: 8854899-8855056 Caenorhabditis elegans
Exon135082   171   IV: 8856475-8856645 Caenorhabditis elegans
Exon135087   104   IV: 8856719-8856822 Caenorhabditis elegans
Exon135092   76   IV: 8856876-8856951 Caenorhabditis elegans
Exon135097   171   IV: 8857003-8857173 Caenorhabditis elegans
Exon135102   227   IV: 8857219-8857445 Caenorhabditis elegans
Exon135108   117   IV: 8860082-8860198 Caenorhabditis elegans
Exon135113   178   IV: 8860546-8860723 Caenorhabditis elegans
Exon135117   260   IV: 8860966-8861225 Caenorhabditis elegans
Exon135121   164   IV: 8861276-8861439 Caenorhabditis elegans
Exon135123   268   IV: 8861956-8862223 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T11B7.4e.1 8852494 8862223 1

1 Sequence

Length
2268

1 Sequence Ontology Term

Identifier Name Description
transcript