WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C53B4.4k.1 Sequence Name  C53B4.4k.1
Length (nt)  4659   Chromosome Location  IV: 8975526-8984575
Chromosome . Primary Identifier  IV Chromosome Location . Start  8975526
Chromosome Location . End  8984575 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C53B4.4k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008274 pdzd-8 C53B4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C53B4.4k C53B4.4k 4098   IV: 8975637-8975681

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4k.1 8975526 8984575 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon135577   156   IV: 8975526-8975681 Caenorhabditis elegans
Exon135595   230   IV: 8975797-8976026 Caenorhabditis elegans
Exon135606   175   IV: 8976113-8976287 Caenorhabditis elegans
Exon135617   198   IV: 8976396-8976593 Caenorhabditis elegans
Exon135628   160   IV: 8976638-8976797 Caenorhabditis elegans
Exon135639   468   IV: 8977056-8977523 Caenorhabditis elegans
Exon135647   177   IV: 8977730-8977906 Caenorhabditis elegans
Exon135658   102   IV: 8978586-8978687 Caenorhabditis elegans
Exon135670   347   IV: 8980361-8980707 Caenorhabditis elegans
Exon135681   480   IV: 8980879-8981358 Caenorhabditis elegans
Exon135687   389   IV: 8981695-8982083 Caenorhabditis elegans
Exon135703   248   IV: 8982146-8982393 Caenorhabditis elegans
Exon135714   306   IV: 8982748-8983053 Caenorhabditis elegans
Exon135725   109   IV: 8983108-8983216 Caenorhabditis elegans
Exon135736   160   IV: 8983263-8983422 Caenorhabditis elegans
Exon135747   178   IV: 8983470-8983647 Caenorhabditis elegans
Exon135752   155   IV: 8983694-8983848 Caenorhabditis elegans
Exon135770   621   IV: 8983955-8984575 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C53B4.4k.1 8975526 8984575 1

1 Sequence

Length
4659

1 Sequence Ontology Term

Identifier Name Description
transcript