WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W09C2.3c.1 Sequence Name  W09C2.3c.1
Length (nt)  4451   Chromosome Location  IV: 9625909-9631734
Chromosome . Primary Identifier  IV Chromosome Location . Start  9625909
Chromosome Location . End  9631734 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W09C2.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003151 mca-1 W09C2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W09C2.3c W09C2.3c 3750   IV: 9626523-9626582

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W09C2.3c.1 9625909 9631734 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138087   674   IV: 9625909-9626582 Caenorhabditis elegans
Exon138093   131   IV: 9626631-9626761 Caenorhabditis elegans
Exon138097   142   IV: 9626816-9626957 Caenorhabditis elegans
Exon138101   1392   IV: 9627005-9628396 Caenorhabditis elegans
Exon138106   1236   IV: 9628746-9629981 Caenorhabditis elegans
Exon138110   156   IV: 9630037-9630192 Caenorhabditis elegans
Exon138115   282   IV: 9630237-9630518 Caenorhabditis elegans
Exon138118   177   IV: 9630614-9630790 Caenorhabditis elegans
Exon138121   78   IV: 9631241-9631318 Caenorhabditis elegans
Exon138122   183   IV: 9631552-9631734 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W09C2.3c.1 9625909 9631734 -1

1 Sequence

Length
4451

1 Sequence Ontology Term

Identifier Name Description
transcript