WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F58G6.1.2 Sequence Name  F58G6.1.2
Length (nt)  1780   Chromosome Location  IV: 9644299-9647697
Chromosome . Primary Identifier  IV Chromosome Location . Start  9644299
Chromosome Location . End  9647697 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F58G6.1.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010272 amph-1 F58G6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F58G6.1 F58G6.1 1386   IV: 9644687-9645001

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F58G6.1.2 9644299 9647697 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon138149   703   IV: 9644299-9645001 Caenorhabditis elegans
Exon138151   66   IV: 9645345-9645410 Caenorhabditis elegans
Exon138153   99   IV: 9645494-9645592 Caenorhabditis elegans
Exon138155   93   IV: 9645877-9645969 Caenorhabditis elegans
Exon138157   156   IV: 9646019-9646174 Caenorhabditis elegans
Exon138159   99   IV: 9646556-9646654 Caenorhabditis elegans
Exon138161   87   IV: 9646703-9646789 Caenorhabditis elegans
Exon138163   81   IV: 9646946-9647026 Caenorhabditis elegans
Exon138165   102   IV: 9647075-9647176 Caenorhabditis elegans
Exon138167   117   IV: 9647224-9647340 Caenorhabditis elegans
Exon138169   114   IV: 9647476-9647589 Caenorhabditis elegans
Exon138171   63   IV: 9647635-9647697 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F58G6.1.2 9644299 9647697 -1

1 Sequence

Length
1780

1 Sequence Ontology Term

Identifier Name Description
transcript