WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47E12.6.1 Sequence Name  C47E12.6.1
Length (nt)  2648   Chromosome Location  IV: 9983195-9989678
Chromosome . Primary Identifier  IV Chromosome Location . Start  9983195
Chromosome Location . End  9989678 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47E12.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008150 mam-2 C47E12.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47E12.6 C47E12.6 2325   IV: 9983290-9983341

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47E12.6.1 9983195 9989678 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon139548   147   IV: 9983195-9983341 Caenorhabditis elegans
Exon139549   96   IV: 9983391-9983486 Caenorhabditis elegans
Exon139552   301   IV: 9986192-9986492 Caenorhabditis elegans
Exon139553   177   IV: 9986541-9986717 Caenorhabditis elegans
Exon139554   95   IV: 9986764-9986858 Caenorhabditis elegans
Exon139555   137   IV: 9987103-9987239 Caenorhabditis elegans
Exon139556   188   IV: 9987322-9987509 Caenorhabditis elegans
Exon139557   142   IV: 9987552-9987693 Caenorhabditis elegans
Exon139558   471   IV: 9987743-9988213 Caenorhabditis elegans
Exon139559   333   IV: 9988262-9988594 Caenorhabditis elegans
Exon139560   117   IV: 9988983-9989099 Caenorhabditis elegans
Exon139561   117   IV: 9989146-9989262 Caenorhabditis elegans
Exon139562   327   IV: 9989352-9989678 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47E12.6.1 9983195 9989678 1

1 Sequence

Length
2648

1 Sequence Ontology Term

Identifier Name Description
transcript