WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K04D7.4a.1 Sequence Name  K04D7.4a.1
Length (nt)  3624   Chromosome Location  IV: 10183842-10194445
Chromosome . Primary Identifier  IV Chromosome Location . Start  10183842
Chromosome Location . End  10194445 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04D7.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010558 ptrg-1 K04D7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04D7.4a K04D7.4a 3480   IV: 10183950-10184009

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:K04D7.4a.1 10183842 10194445 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon140301   168   IV: 10183842-10184009 Caenorhabditis elegans
Exon140303   134   IV: 10184060-10184193 Caenorhabditis elegans
Exon140305   469   IV: 10184384-10184852 Caenorhabditis elegans
Exon140307   147   IV: 10184904-10185050 Caenorhabditis elegans
Exon140309   136   IV: 10185103-10185238 Caenorhabditis elegans
Exon140311   281   IV: 10185289-10185569 Caenorhabditis elegans
Exon140313   135   IV: 10185613-10185747 Caenorhabditis elegans
Exon140315   272   IV: 10185867-10186138 Caenorhabditis elegans
Exon140317   237   IV: 10186190-10186426 Caenorhabditis elegans
Exon140319   130   IV: 10186473-10186602 Caenorhabditis elegans
Exon140321   79   IV: 10186652-10186730 Caenorhabditis elegans
Exon140323   181   IV: 10186775-10186955 Caenorhabditis elegans
Exon140325   94   IV: 10187282-10187375 Caenorhabditis elegans
Exon140327   568   IV: 10187423-10187990 Caenorhabditis elegans
Exon140329   145   IV: 10188040-10188184 Caenorhabditis elegans
Exon140333   190   IV: 10190113-10190302 Caenorhabditis elegans
Exon140339   91   IV: 10193282-10193372 Caenorhabditis elegans
Exon140341   167   IV: 10194279-10194445 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:K04D7.4a.1 10183842 10194445 -1

1 Sequence

Length
3624

1 Sequence Ontology Term

Identifier Name Description
transcript