WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K04D7.4a Sequence Name  K04D7.4a
Length (nt)  3480   Chromosome Location  IV: 10183950-10184009
Chromosome . Primary Identifier  IV Chromosome Location . Start  10183950
Chromosome Location . End  10184009
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04D7.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE40655 PTRG-1, isoform a 131.4 1159 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00001520
WBRNAi00049897
WBRNAi00016590

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:K04D7.4a 10183950 10184009 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010558 ptrg-1 K04D7.4 Caenorhabditis elegans

18 Locations


Feature . Primary Identifier
Start End Strand
CDS:K04D7.4a 10183950 10184009 -1
CDS:K04D7.4a 10184060 10184193 -1
CDS:K04D7.4a 10184384 10184852 -1
CDS:K04D7.4a 10184904 10185050 -1
CDS:K04D7.4a 10185103 10185238 -1
CDS:K04D7.4a 10185289 10185569 -1
CDS:K04D7.4a 10185613 10185747 -1
CDS:K04D7.4a 10185867 10186138 -1
CDS:K04D7.4a 10186190 10186426 -1
CDS:K04D7.4a 10186473 10186602 -1
CDS:K04D7.4a 10186652 10186730 -1
CDS:K04D7.4a 10186775 10186955 -1
CDS:K04D7.4a 10187282 10187375 -1
CDS:K04D7.4a 10187423 10187990 -1
CDS:K04D7.4a 10188040 10188184 -1
CDS:K04D7.4a 10190113 10190302 -1
CDS:K04D7.4a 10193282 10193372 -1
CDS:K04D7.4a 10194279 10194409 -1

1 Sequence

Length
3480

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K04D7.4a.1 K04D7.4a.1 3624   IV: 10183842-10194445