WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R11A8.7e.1 Sequence Name  R11A8.7e.1
Length (nt)  4452   Chromosome Location  IV: 10381518-10386742
Chromosome . Primary Identifier  IV Chromosome Location . Start  10381518
Chromosome Location . End  10386742 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11A8.7e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011240 mask-1 R11A8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11A8.7e R11A8.7e 4452   IV: 10381518-10381578

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R11A8.7e.1 10381518 10386742 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon141167   61   IV: 10381518-10381578 Caenorhabditis elegans
Exon141175   149   IV: 10381659-10381807 Caenorhabditis elegans
Exon141179   656   IV: 10381861-10382516 Caenorhabditis elegans
Exon141192   301   IV: 10382569-10382869 Caenorhabditis elegans
Exon141203   900   IV: 10382925-10383824 Caenorhabditis elegans
Exon141212   304   IV: 10384030-10384333 Caenorhabditis elegans
Exon141223   330   IV: 10384400-10384729 Caenorhabditis elegans
Exon141233   629   IV: 10384777-10385405 Caenorhabditis elegans
Exon141244   519   IV: 10385457-10385975 Caenorhabditis elegans
Exon141255   177   IV: 10386027-10386203 Caenorhabditis elegans
Exon141266   329   IV: 10386272-10386600 Caenorhabditis elegans
Exon141275   97   IV: 10386646-10386742 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R11A8.7e.1 10381518 10386742 1

1 Sequence

Length
4452

1 Sequence Ontology Term

Identifier Name Description
transcript