WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R11A8.7c.1 Sequence Name  R11A8.7c.1
Length (nt)  4218   Chromosome Location  IV: 10381885-10386742
Chromosome . Primary Identifier  IV Chromosome Location . Start  10381885
Chromosome Location . End  10386742 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R11A8.7c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011240 mask-1 R11A8.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R11A8.7c R11A8.7c 4218   IV: 10381885-10382516

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R11A8.7c.1 10381885 10386742 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon141186   632   IV: 10381885-10382516 Caenorhabditis elegans
Exon141190   301   IV: 10382569-10382869 Caenorhabditis elegans
Exon141201   900   IV: 10382925-10383824 Caenorhabditis elegans
Exon141211   304   IV: 10384030-10384333 Caenorhabditis elegans
Exon141222   330   IV: 10384400-10384729 Caenorhabditis elegans
Exon141231   629   IV: 10384777-10385405 Caenorhabditis elegans
Exon141242   519   IV: 10385457-10385975 Caenorhabditis elegans
Exon141253   177   IV: 10386027-10386203 Caenorhabditis elegans
Exon141264   329   IV: 10386272-10386600 Caenorhabditis elegans
Exon141273   97   IV: 10386646-10386742 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R11A8.7c.1 10381885 10386742 1

1 Sequence

Length
4218

1 Sequence Ontology Term

Identifier Name Description
transcript