WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F01G4.3.1 Sequence Name  F01G4.3.1
Length (nt)  3931   Chromosome Location  IV: 11135566-11142364
Chromosome . Primary Identifier  IV Chromosome Location . Start  11135566
Chromosome Location . End  11142364 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F01G4.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008502 skih-2 F01G4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F01G4.3 F01G4.3 3801   IV: 11135673-11135876

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F01G4.3.1 11135566 11142364 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon143592   311   IV: 11135566-11135876 Caenorhabditis elegans
Exon143593   135   IV: 11135928-11136062 Caenorhabditis elegans
Exon143595   333   IV: 11136111-11136443 Caenorhabditis elegans
Exon143598   226   IV: 11136937-11137162 Caenorhabditis elegans
Exon143600   212   IV: 11137215-11137426 Caenorhabditis elegans
Exon143602   81   IV: 11137475-11137555 Caenorhabditis elegans
Exon143604   525   IV: 11138087-11138611 Caenorhabditis elegans
Exon143606   126   IV: 11139123-11139248 Caenorhabditis elegans
Exon143608   392   IV: 11139296-11139687 Caenorhabditis elegans
Exon143610   304   IV: 11140160-11140463 Caenorhabditis elegans
Exon143612   253   IV: 11140513-11140765 Caenorhabditis elegans
Exon143614   146   IV: 11141144-11141289 Caenorhabditis elegans
Exon143616   413   IV: 11141337-11141749 Caenorhabditis elegans
Exon143618   179   IV: 11141796-11141974 Caenorhabditis elegans
Exon143620   177   IV: 11142023-11142199 Caenorhabditis elegans
Exon143622   118   IV: 11142247-11142364 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F01G4.3.1 11135566 11142364 -1

1 Sequence

Length
3931

1 Sequence Ontology Term

Identifier Name Description
transcript