WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07H5.2a.1 Sequence Name  R07H5.2a.1
Length (nt)  2133   Chromosome Location  IV: 11179645-11183008
Chromosome . Primary Identifier  IV Chromosome Location . Start  11179645
Chromosome Location . End  11183008 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07H5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011122 cpt-2 R07H5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07H5.2a R07H5.2a 1941   IV: 11179645-11179811

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07H5.2a.1 11179645 11183008 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon143745   167   IV: 11179645-11179811 Caenorhabditis elegans
Exon143746   256   IV: 11179867-11180122 Caenorhabditis elegans
Exon143747   134   IV: 11180398-11180531 Caenorhabditis elegans
Exon143749   130   IV: 11180580-11180709 Caenorhabditis elegans
Exon143751   160   IV: 11180761-11180920 Caenorhabditis elegans
Exon143753   145   IV: 11180969-11181113 Caenorhabditis elegans
Exon143755   77   IV: 11181160-11181236 Caenorhabditis elegans
Exon143757   421   IV: 11181284-11181704 Caenorhabditis elegans
Exon143759   367   IV: 11181757-11182123 Caenorhabditis elegans
Exon143764   276   IV: 11182733-11183008 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07H5.2a.1 11179645 11183008 1

1 Sequence

Length
2133

1 Sequence Ontology Term

Identifier Name Description
transcript