WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201342 Gene Name  R07H5.14
Sequence Name  ? R07H5.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by ifo-1; spr-5; and ilc-17.1 based on microarray and RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 136
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201342

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R07H5.14 R07H5.14 136   IV: 11211827-11211962
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
tm7983
gk963663
gk212248
WBVar01857897

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201342 11211827 11211962 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_11211498..11211826   329 IV: 11211498-11211826 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Transcripts that showed significantly increased expression in spr-5(by101) L1 animals comparing to in N2 control. DeSeq2 (v.2.11.40.2), p < 0.05. WBPaper00060886:spr-5(by101)_upregulated
  Transcripts that showed significantly increased expression in ifo-1(kc2) comparing to in N2 animals. ANOVA, p-value < 0.05. WBPaper00056167:ifo-1(kc2)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201342 11211827 11211962 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
136

1 Sequence Ontology Term