WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014829 Gene Name  T01G1.t2
Sequence Name  ? T01G1.t2 Organism  Caenorhabditis elegans
Automated Description  Is affected by adr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 73
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014829

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk963666
gk963664
gk963703
gk963917
WBVar02124419

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00014829 11363194 11363266 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_11362198..11363193   996 IV: 11362198-11363193 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Fungi infection: Fusarium oxysporum Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. WBPaper00053368:F.oxysporum_regulated
  Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2. DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5. WBPaper00055226:adr-1(tm668)_downregulated
Diet: supplementation of dietary fat P-80. Transcripts that showed significantly decreased expression in animals grown with supplementation of dietary fat P-80. Differential expression was assessed using an empirical Bayes moderated t test within limmas linear model framework including the precisio weights estimated by voom. Fold change > 2, FDR < 0.05 WBPaper00062534:fat-P-80_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00014829 11363194 11363266 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
73

1 Sequence Ontology Term