WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K01A6.2a.1 Sequence Name  K01A6.2a.1
Length (nt)  3499   Chromosome Location  IV: 11715039-11729280
Chromosome . Primary Identifier  IV Chromosome Location . Start  11715039
Chromosome Location . End  11729280 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K01A6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010444 magi-1 K01A6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K01A6.2a K01A6.2a 3165   IV: 11715090-11715108

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K01A6.2a.1 11715039 11729280 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145168   70   IV: 11715039-11715108 Caenorhabditis elegans
Exon145170   65   IV: 11715156-11715220 Caenorhabditis elegans
Exon145172   67   IV: 11715397-11715463 Caenorhabditis elegans
Exon145174   238   IV: 11715984-11716221 Caenorhabditis elegans
Exon145176   197   IV: 11716267-11716463 Caenorhabditis elegans
Exon145179   120   IV: 11716860-11716979 Caenorhabditis elegans
Exon145193   133   IV: 11722520-11722652 Caenorhabditis elegans
Exon145196   96   IV: 11722990-11723085 Caenorhabditis elegans
Exon145201   139   IV: 11724956-11725094 Caenorhabditis elegans
Exon145206   282   IV: 11725145-11725426 Caenorhabditis elegans
Exon145212   654   IV: 11726353-11727006 Caenorhabditis elegans
Exon145217   882   IV: 11727056-11727937 Caenorhabditis elegans
Exon145223   147   IV: 11728371-11728517 Caenorhabditis elegans
Exon145230   409   IV: 11728872-11729280 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K01A6.2a.1 11715039 11729280 1

1 Sequence

Length
3499

1 Sequence Ontology Term

Identifier Name Description
transcript