WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:M117.2a Sequence Name  M117.2a
Length (nt)  747   Chromosome Location  IV: 11820991-11821284
Chromosome . Primary Identifier  IV Chromosome Location . Start  11820991
Chromosome Location . End  11821284
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M117.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE06200 PAR-5, isoform a 28.2 248 Caenorhabditis elegans
 

Other

81 RNAi

WormBase ID
WBRNAi00081760
WBRNAi00066493
WBRNAi00066492
WBRNAi00091272
WBRNAi00091271
WBRNAi00091274
WBRNAi00066940
WBRNAi00066974
WBRNAi00067209
WBRNAi00067268
WBRNAi00067294
WBRNAi00067503
WBRNAi00067563
WBRNAi00067647
WBRNAi00067719
WBRNAi00067842
WBRNAi00069772
WBRNAi00069777
WBRNAi00091302
WBRNAi00081759
WBRNAi00081758
WBRNAi00081761
WBRNAi00076579
WBRNAi00083403
WBRNAi00087581
WBRNAi00087582
WBRNAi00083426
WBRNAi00027621
WBRNAi00050957
WBRNAi00066490

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:M117.2a 11820991 11821284 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003920 par-5 M117.2 Caenorhabditis elegans

4 Locations


Feature . Primary Identifier
Start End Strand
CDS:M117.2a 11820991 11821284 -1
CDS:M117.2a 11821332 11821523 -1
CDS:M117.2a 11821589 11821759 -1
CDS:M117.2a 11821808 11821897 -1

1 Sequence

Length
747

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:M117.2a.2 M117.2a.2 1150   IV: 11820506-11821917
Transcript:M117.2a.3 M117.2a.3 1252   IV: 11820506-11821917
Transcript:M117.2a.1 M117.2a.1 1106   IV: 11820506-11821917
Transcript:M117.2a.4 M117.2a.4 1214   IV: 11820507-11821924