WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C29E6.2b.1 Sequence Name  C29E6.2b.1
Length (nt)  3703   Chromosome Location  IV: 11864526-11875692
Chromosome . Primary Identifier  IV Chromosome Location . Start  11864526
Chromosome Location . End  11875692 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C29E6.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007801 trpa-1 C29E6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C29E6.2b C29E6.2b 3633   IV: 11864547-11864628

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.2b.1 11864526 11875692 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145626   103   IV: 11864526-11864628 Caenorhabditis elegans
Exon145629   409   IV: 11865072-11865480 Caenorhabditis elegans
Exon145631   979   IV: 11866041-11867019 Caenorhabditis elegans
Exon145633   94   IV: 11867094-11867187 Caenorhabditis elegans
Exon145635   87   IV: 11867235-11867321 Caenorhabditis elegans
Exon145644   166   IV: 11873251-11873416 Caenorhabditis elegans
Exon145646   312   IV: 11873469-11873780 Caenorhabditis elegans
Exon145648   454   IV: 11873979-11874432 Caenorhabditis elegans
Exon145650   408   IV: 11874498-11874905 Caenorhabditis elegans
Exon145652   471   IV: 11874956-11875426 Caenorhabditis elegans
Exon145653   220   IV: 11875473-11875692 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.2b.1 11864526 11875692 1

1 Sequence

Length
3703

1 Sequence Ontology Term

Identifier Name Description
transcript