WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C29E6.1a.1 Sequence Name  C29E6.1a.1
Length (nt)  2631   Chromosome Location  IV: 11885615-11891081
Chromosome . Primary Identifier  IV Chromosome Location . Start  11885615
Chromosome Location . End  11891081 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C29E6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002827 let-653 C29E6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C29E6.1a C29E6.1a 2439   IV: 11885618-11885678

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.1a.1 11885615 11891081 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145715   64   IV: 11885615-11885678 Caenorhabditis elegans
Exon145717   294   IV: 11885730-11886023 Caenorhabditis elegans
Exon145720   279   IV: 11886446-11886724 Caenorhabditis elegans
Exon145723   206   IV: 11886770-11886975 Caenorhabditis elegans
Exon145726   161   IV: 11888424-11888584 Caenorhabditis elegans
Exon145730   477   IV: 11888697-11889173 Caenorhabditis elegans
Exon145731   297   IV: 11889557-11889853 Caenorhabditis elegans
Exon145734   370   IV: 11890084-11890453 Caenorhabditis elegans
Exon145737   184   IV: 11890551-11890734 Caenorhabditis elegans
Exon145741   299   IV: 11890783-11891081 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.1a.1 11885615 11891081 1

1 Sequence

Length
2631

1 Sequence Ontology Term

Identifier Name Description
transcript