WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C29E6.1c.1 Sequence Name  C29E6.1c.1
Length (nt)  2082   Chromosome Location  IV: 11885618-11890892
Chromosome . Primary Identifier  IV Chromosome Location . Start  11885618
Chromosome Location . End  11890892 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C29E6.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002827 let-653 C29E6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C29E6.1c C29E6.1c 2082   IV: 11885618-11885678

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.1c.1 11885618 11890892 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon145716   61   IV: 11885618-11885678 Caenorhabditis elegans
Exon145719   294   IV: 11885730-11886023 Caenorhabditis elegans
Exon145722   279   IV: 11886446-11886724 Caenorhabditis elegans
Exon145725   206   IV: 11886770-11886975 Caenorhabditis elegans
Exon145728   161   IV: 11888424-11888584 Caenorhabditis elegans
Exon145729   120   IV: 11888697-11888816 Caenorhabditis elegans
Exon145733   297   IV: 11889557-11889853 Caenorhabditis elegans
Exon145736   370   IV: 11890084-11890453 Caenorhabditis elegans
Exon145739   184   IV: 11890551-11890734 Caenorhabditis elegans
Exon145740   110   IV: 11890783-11890892 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C29E6.1c.1 11885618 11890892 1

1 Sequence

Length
2082

1 Sequence Ontology Term

Identifier Name Description
transcript