WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M18.5.1 Sequence Name  M18.5.1
Length (nt)  3838   Chromosome Location  IV: 12114810-12121165
Chromosome . Primary Identifier  IV Chromosome Location . Start  12114810
Chromosome Location . End  12121165 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M18.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010890 ddb-1 M18.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M18.5 M18.5 3405   IV: 12115202-12115263

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M18.5.1 12114810 12121165 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146450   454   IV: 12114810-12115263 Caenorhabditis elegans
Exon146451   106   IV: 12115319-12115424 Caenorhabditis elegans
Exon146452   817   IV: 12115476-12116292 Caenorhabditis elegans
Exon146453   127   IV: 12116354-12116480 Caenorhabditis elegans
Exon146454   224   IV: 12116790-12117013 Caenorhabditis elegans
Exon146455   335   IV: 12117353-12117687 Caenorhabditis elegans
Exon146456   702   IV: 12118299-12119000 Caenorhabditis elegans
Exon146457   325   IV: 12119049-12119373 Caenorhabditis elegans
Exon146458   202   IV: 12119863-12120064 Caenorhabditis elegans
Exon146459   289   IV: 12120109-12120397 Caenorhabditis elegans
Exon146460   143   IV: 12120857-12120999 Caenorhabditis elegans
Exon146461   114   IV: 12121052-12121165 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M18.5.1 12114810 12121165 -1

1 Sequence

Length
3838

1 Sequence Ontology Term

Identifier Name Description
transcript