WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196985 Gene Name  F35G2.12
Sequence Name  ? F35G2.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by hpl-2 and ilc-17.1 based on RNA-seq studies. Is affected by multi-walled carbon nanotube and Tunicamycin based on RNA-seq and microarray studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 68
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196985

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F35G2.12 F35G2.12 68   IV: 12217377-12217444
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk964278
gk964078
gk964500
gk962765
gk964475
gk964320
WBVar02122961
WBVar01795675

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00196985 12217377 12217444 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrIV_12217445..12218408   964 IV: 12217445-12218408 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in hpl-2(tm1489) comparing to in N2 animals. DESeq2, adjusted p-value < 0.05, log2 fold change > 2 or < -2. WBPaper00054493:hpl-2(tm1489)_downregulated
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Genes that showed significantly decreased expression after exposure to 1mg/L MWCNTs from L1 larva to young adult. Transcripts with false discovery rate-corrected p-values < 0.05 and fold change > 2 were defined as differentially expressed. WBPaper00049377:MWCNT_downregulated
  Transcripts that showed significantly decreased expression in postdauer adults comparing to adult animals that bypassed the dauger stage. DESeq 2, FDR < 0.05. WBPaper00064494:postdauer_downregulated_WholeAnimal
Fungi infection: Fusarium oxysporum Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. WBPaper00053368:F.oxysporum_regulated
  Transcripts that showed significantly decreased expression in animals treated with 25ug per mL tunicamycin for 4 hours, comparing to control animals. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:Tunicamycin_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00196985 12217377 12217444 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
68

1 Sequence Ontology Term