WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42C1.4c.1 Sequence Name  C42C1.4c.1
Length (nt)  3369   Chromosome Location  IV: 12270690-12274827
Chromosome . Primary Identifier  IV Chromosome Location . Start  12270690
Chromosome Location . End  12274827 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42C1.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016582 vps-8 C42C1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42C1.4c C42C1.4c 3369   IV: 12270690-12270870

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42C1.4c.1 12270690 12274827 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146874   181   IV: 12270690-12270870 Caenorhabditis elegans
Exon146877   125   IV: 12270920-12271044 Caenorhabditis elegans
Exon146879   82   IV: 12271384-12271465 Caenorhabditis elegans
Exon146881   256   IV: 12271517-12271772 Caenorhabditis elegans
Exon146883   469   IV: 12271831-12272299 Caenorhabditis elegans
Exon146885   426   IV: 12272344-12272769 Caenorhabditis elegans
Exon146887   342   IV: 12272826-12273167 Caenorhabditis elegans
Exon146889   909   IV: 12273225-12274133 Caenorhabditis elegans
Exon146891   501   IV: 12274197-12274697 Caenorhabditis elegans
Exon146892   78   IV: 12274750-12274827 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42C1.4c.1 12270690 12274827 -1

1 Sequence

Length
3369

1 Sequence Ontology Term

Identifier Name Description
transcript