WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C42C1.4c Sequence Name  C42C1.4c
Length (nt)  3369   Chromosome Location  IV: 12270690-12270870
Chromosome . Primary Identifier  IV Chromosome Location . Start  12270690
Chromosome Location . End  12270870
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42C1.4c

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE49917 VPS-8, isoform c 128.3 1122 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00042341
WBRNAi00011862
WBRNAi00076210
WBRNAi00029744
WBRNAi00061750
WBRNAi00113658
WBRNAi00113659

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C42C1.4c 12270690 12270870 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016582 vps-8 C42C1.4 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:C42C1.4c 12270690 12270870 -1
CDS:C42C1.4c 12270920 12271044 -1
CDS:C42C1.4c 12271384 12271465 -1
CDS:C42C1.4c 12271517 12271772 -1
CDS:C42C1.4c 12271831 12272299 -1
CDS:C42C1.4c 12272344 12272769 -1
CDS:C42C1.4c 12272826 12273167 -1
CDS:C42C1.4c 12273225 12274133 -1
CDS:C42C1.4c 12274197 12274697 -1
CDS:C42C1.4c 12274750 12274827 -1

1 Sequence

Length
3369

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C42C1.4c.1 C42C1.4c.1 3369   IV: 12270690-12274827