WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C42C1.7a.1 Sequence Name  C42C1.7a.1
Length (nt)  2226   Chromosome Location  IV: 12293233-12301261
Chromosome . Primary Identifier  IV Chromosome Location . Start  12293233
Chromosome Location . End  12301261 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C42C1.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016585 oac-59 C42C1.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C42C1.7a C42C1.7a 2097   IV: 12293358-12293603

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C42C1.7a.1 12293233 12301261 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon146968   371   IV: 12293233-12293603 Caenorhabditis elegans
Exon146970   211   IV: 12297822-12298032 Caenorhabditis elegans
Exon146971   112   IV: 12298082-12298193 Caenorhabditis elegans
Exon146972   121   IV: 12298650-12298770 Caenorhabditis elegans
Exon146973   107   IV: 12298815-12298921 Caenorhabditis elegans
Exon146974   164   IV: 12298968-12299131 Caenorhabditis elegans
Exon146975   64   IV: 12299179-12299242 Caenorhabditis elegans
Exon146976   167   IV: 12299809-12299975 Caenorhabditis elegans
Exon146977   373   IV: 12300054-12300426 Caenorhabditis elegans
Exon146978   404   IV: 12300517-12300920 Caenorhabditis elegans
Exon146979   132   IV: 12301130-12301261 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C42C1.7a.1 12293233 12301261 -1

1 Sequence

Length
2226

1 Sequence Ontology Term

Identifier Name Description
transcript