WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZC518.1f.1 Sequence Name  ZC518.1f.1
Length (nt)  1780   Chromosome Location  IV: 12349940-12355724
Chromosome . Primary Identifier  IV Chromosome Location . Start  12349940
Chromosome Location . End  12355724 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZC518.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013921 best-22 ZC518.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZC518.1f ZC518.1f 1491   IV: 12349998-12350087

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZC518.1f.1 12349940 12355724 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147086   148   IV: 12349940-12350087 Caenorhabditis elegans
Exon147096   89   IV: 12350655-12350743 Caenorhabditis elegans
Exon147102   138   IV: 12350790-12350927 Caenorhabditis elegans
Exon147108   400   IV: 12351261-12351660 Caenorhabditis elegans
Exon147114   84   IV: 12351714-12351797 Caenorhabditis elegans
Exon147120   144   IV: 12352168-12352311 Caenorhabditis elegans
Exon147130   152   IV: 12353144-12353295 Caenorhabditis elegans
Exon147136   76   IV: 12353343-12353418 Caenorhabditis elegans
Exon147142   119   IV: 12353686-12353804 Caenorhabditis elegans
Exon147145   33   IV: 12353897-12353929 Caenorhabditis elegans
Exon147151   62   IV: 12354096-12354157 Caenorhabditis elegans
Exon147159   335   IV: 12355390-12355724 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZC518.1f.1 12349940 12355724 1

1 Sequence

Length
1780

1 Sequence Ontology Term

Identifier Name Description
transcript